{ "tokens_out": 3569, "outcome": "pass", "suggested_fix": null, "cycle_checks": null, "fault": { "owner": null, "status": "resolved", "reason": null, "evidence": [] }, "runtime_revision": null, "agent_execution": "native_agent", "time_to_working_s": null, "usage_complete": true, "runtime": null, "architecture": null, "local_or_hosted": null, "agent_interfaces_note": null, "platform_details": null, "platforms_claimed": null, "maintenance": null, "evidence_strength": null, "purpose": "initial", "topic": null, "needs_which": null, "tested_with": null, "native_bundle": null, "agent_runtime": "claude-code", "maintenance_note": null, "runtime_version": null, "does_what_it_says": null, "commit": "4461367312f51f3a1947d7df0f7ce2db8bc7e2a7", "failure_origin": null, "stuck_step": null, "repo_url": null, "needs": null, "checks": [ { "check": "operation", "status": "PASS", "details": { "working": true, "argv": [ "/usr/local/bin/uvx", "deepdna-mcp@0.1.1" ], "kind": "mcp", "serverInfo": { "name": "deepdna-local", "title": "DeepDNA local", "version": "0.1.1", "websiteUrl": "https://github.com/alfonsoguv/deepdna-mcp" }, "tools": [ "read_dna_file", "lookup_drug_gene" ], "scope": "product operation" } } ], "open_issues": null, "agent_runtime_version": "2.1.300 (Claude Code)", "verifies_run_id": null, "total_s": 70.23290085792542, "license": null, "tool_calls": 8, "model_version": "claude-haiku-5-5", "example_checks": [], "mcp": null, "other_model": null, "first_use_s": null, "native_tool_calls": 8, "last_commit_at": null, "source": "https://github.com/alfonsoguv/deepdna-mcp", "models_agree": null, "maintenance_verdict": null, "cost_usd": 0.00545572, "safety": null, "answered_issues": null, "what_failed": null, "steps": [ "cd && ls -la && cat README.md 2>/dev/null | head -300", "cd && git log -1 --format=%H 2>/dev/null; ls .github/workflows 2>/dev/null; cat pyproject.toml package.json 2>/dev/null | head -80", "which uv uvx pip3 python3; python3 --version; python3 -m venv --help >/dev/null 2>&1 && echo venv_ok; cat ; ls 2>/dev/null; echo \"CDP=$CDP_URL\"", "curl -LsSf https://astral.sh/uv/install.sh | env UV_INSTALL_DIR=/usr/local/bin sh 2>&1 | tail -5; which uv uvx; uv --version", "curl -LsSf https://astral.sh/uv/install.sh | sudo env UV_INSTALL_DIR=/usr/local/bin sh 2>&1 | tail -3; which uv uvx && uv --version", "cd /tmp && export NODE_USE_ENV_PROXY=1 && { printf '%s\\n' '{\"jsonrpc\":\"2.0\",\"id\":1,\"method\":\"initialize\",\"params\":{\"protocolVersion\":\"2025-06-18\",\"capabilities\":{},\"clientInfo\":{\"name\":\"smoke\",\"version\":\"0\"}}}' '{\"jsonrpc\":\"2.0\",\"method\":\"notifications/initialized\"}' '{\"jsonrpc\":\"2.0\",\"id\":2,\"method\":\"tools/list\"}'; sleep 20; } | timeout 120 uvx deepdna-mcp@0.1.1 2>/tmp/uvx_err.txt | head -c 4000; echo \"rc=${PIPESTATUS[1]}\"; tail -5 /tmp/uvx_err.txt", "cd && mkdir -p .coldpass && ls -la .coldpass && cat > .coldpass/probe.json <<'EOF'\n{\"kind\":\"mcp\",\"argv\":[\"/usr/local/bin/uvx\",\"deepdna-mcp@0.1.1\"],\"cwd\":\"/tmp\"}\nEOF\ncat > .coldpass/report.json <<'EOF'\n{\"outcome\":\"working\",\"operation\":\"Started the README's local MCP server (uvx deepdna-mcp@0.1.1) over stdio and listed its tools via initialize + tools/list; server reported name deepdna-local 0.1.1 and tools read_dna_file and lookup_drug_gene (among others).\",\"operation_scope\":\"Verified start and tools/list only. No DNA file was read and no lookup_drug_gene call was made, so the network-backed lookup against deepdna.ai was not exercised. The remote hosted server (https://deepdna.ai/mcp) was not tested.\",\"steps\":[\"Read README.md\",\"Checked python3 3.12.3 present, no uv installed\",\"Installed uv 0.13.1 via README-style installer: curl -LsSf https://astral.sh/uv/install.sh | sh (UV_INSTALL_DIR=/usr/local/bin)\",\"Ran README command: uvx deepdna-mcp@0.1.1 as stdio MCP server; sent initialize, notifications/initialized, tools/list\"],\"deviations\":[\"uv installer failed as non-root writing to /usr/local/bin; re-ran with sudo env UV_INSTALL_DIR=/usr/local/bin and it succeeded\",\"Probe uses absolute path /usr/local/bin/uvx because the checker runs in a clean process\"],\"stuck_step\":null,\"main_blocker\":null,\"suggested_fix\":null}\nEOF\n= python3 -I --validate; echo rc=$?", "pgrep -af deepdna || echo \"no leftover deepdna processes\"" ], "platform_conflicts": null, "claims_note": null, "maintained_note": null, "repo": "alfonsoguv/deepdna-mcp", "service_tier": null, "maintained": null, "source_pin": null, "operation_scope": "product operation", "reasoning": "low", "claims": [], "platform": "linux", "cost_to_try": null, "backend": null, "tool_transport": "mcp-assigned-vm", "hardware": null, "agent_interface": null, "profile": { "model": "claude-haiku-5-5", "reasoning": "low" }, "date": "2026-10-18T17:01:38.486192+00:00", "kind": "mcp", "resources": { "cpus": 2, "memory_mib": 4096, "disk_mib": 32768 }, "error_excerpt": null, "pass": true, "evidence_version": null, "source_revision": null, "run_id": "alfonsoguv--deepdna-mcp-claude-haiku-5-5-1792342828253273912", "last_release_at": null, "furthest_model": null, "model": "claude-haiku-5-5", "what_it_did": "Started the README's local MCP server (uvx deepdna-mcp@0.1.1) over stdio and listed its tools via initialize + tools/list; server reported name deepdna-local 0.1.1 and tools read_dna_file and lookup_drug_gene (among others).", "sandbox_source": null, "other_run_id": null, "hosting": null, "tested_commit": null, "guest_setup": null, "mcp_context": null, "agent_interfaces": [], "setup_identity": null, "works": null, "install_s": null, "fix_id": null, "tokens_in": 101966, "tested_at": null, "test_version": "readme-35a4df7562ac6aaecbf68c5247f5297931fc216885efe8863696871d144439bf", "recovery": { "source": "legacy-oct16-18", "original_run_id": "alfonsoguv--deepdna-mcp-claude-haiku-5-5-1792342828253273912", "historical": true, "ledger_sha256": "c5e6a833c182c1e2aecf69d0bd0020aec63c65d98f3e933e4b32232340312736" }, "transcript_url": "/transcripts/alfonsoguv--deepdna-mcp-claude-haiku-5-5-1792342828253273912.txt", "report_url": "/reports/alfonsoguv--deepdna-mcp-claude-haiku-5-5-1792342828253273912.json" }