{ "run_id": "flint-crew--jolly-roger-gpt-6-luna-1793119281113780659", "date": "2026-10-27T16:44:11.692934+00:00", "repo": "flint-crew/jolly-roger", "kind": "repo", "source": "https://github.com/flint-crew/jolly-roger", "commit": "3d4727bec9108fd4ebb4a1a4c3cbedde2db37810", "model": "gpt-6-luna", "model_version": "gpt-6-luna", "test_version": "readme-38e6b13f3b13804effb95797e3466b1a1334da7a232d897cbc8965867f802605", "pass": false, "outcome": "blocked", "time_to_working_s": null, "total_s": 170.57911014556885, "steps": [ "pwd && rg --files -g 'README*' -g 'pyproject.toml' -g 'package.json' -g 'Makefile' -g 'AGENTS.md' | head -80 && git status --short && python3 --version && id -u", "ls -la; find . -maxdepth 3 -type f | head -100; python3 --version; id -u", "cat README.md; cat pyproject.toml", "python3 -m venv /tmp/jolly-venv && /tmp/jolly-venv/bin/pip install .", "git init && git remote add origin https://github.com/flint-crew/jolly-roger && git fetch --depth 1 origin 3d4727bec9108fd4ebb4a1a4c3cbedde2db37810 && git reset --mixed FETCH_HEAD", "python3 -m venv /tmp/jolly-venv && /tmp/jolly-venv/bin/pip install .", "/tmp/jolly-venv/bin/jolly_flagger --help; /tmp/jolly-venv/bin/jolly_tractor --help", "mkdir -p .coldpass; cat > .coldpass/probe.json <<'EOF'\n{\"kind\":\"cli\",\"argv\":[\"/tmp/jolly-venv/bin/jolly_flagger\",\"--help\"],\"cwd\":\"\",\"expected_text\":\"Flag a measurement set based on properties of the Sun\"}\nEOF\ncat > .coldpass/claims.json <<'EOF'\n[{\"kind\":\"claim\",\"claim\":\"The flagger exposes CLI usage and options.\",\"source\":\"For the flagger run:\",\"input\":\"--help\",\"expected\":\"usage and options are displayed\",\"probe_kind\":\"cli\",\"argv\":[\"/tmp/jolly-venv/bin/jolly_flagger\",\"--help\"],\"expected_text\":\"Flag a measurement set based on properties of the Sun\",\"cwd\":\"\"}]\nEOF\ncat > .coldpass/examples.json <<'EOF'\n[{\"kind\":\"example\",\"claim\":\"Show flagger CLI usage.\",\"source\":\"README.md, Usage\",\"input\":\"--help\",\"expected\":\"flagger usage\",\"argv\":[\"/tmp/jolly-venv/bin/jolly_flagger\",\"--help\"],\"cwd\":\"\",\"expected_text\":\"Flag a measurement set based on properties of the Sun\"},{\"kind\":\"example\",\"claim\":\"Show nulling filter CLI usage.\",\"source\":\"README.md, Usage\",\"input\":\"--help\",\"expected\":\"tractor usage\",\"argv\":[\"/tmp/jolly-venv/bin/jolly_tractor\",\"--help\"],\"cwd\":\"\",\"expected_text\":\"Run the Jolly Roger Tractor\"}]\nEOF\ncat > .coldpass/cycles.json <<'EOF'\n{\"detected\":false,\"reason\":\"Inspected README usage and project entry points: the documented commands process measurement-set inputs; no scheduler, loop, webhook, or cycle trigger is documented.\"}\nEOF\n", "= python3 -I --validate --replay", "cat docs/nulling.md; cat docs/flagging.md; sed -n '1,220p' jolly_roger/tractor.py", "grep -n \"def get_parser\\|add_argument\\|def cli\" jolly_roger/tractor.py | tail -40; grep -n \"def compute_tukey_multi_taper\" jolly_roger/tractor.py", "sed -n '1630,1700p' jolly_roger/tractor.py; sed -n '942,1010p' jolly_roger/tractor.py", "grep -n \"class TukeyTractorOptions\\|class TractorOptions\" jolly_roger/tractor.py", "sed -n '1057,1160p' jolly_roger/tractor.py; grep -n \"def .*taper\\|nothing_to_do\" jolly_roger/tractor.py | head -25", "sed -n '1,180p' tests/test_tapering_tukey.py; sed -n '1,160p' jolly_roger/tapering/tukey.py", "cat > .coldpass/probe.json <<'EOF'\n{\"kind\":\"cli\",\"argv\":[\"/tmp/jolly-venv/bin/jolly_tractor\",\"tukey\",\"/tmp/jolly-probe-missing.ms\"],\"cwd\":\"\",\"expected_returncode\":1,\"expected_text\":\"No such file or directory\"}\nEOF\ncat > .coldpass/claims.json <<'EOF'\n[{\"kind\":\"claim\",\"claim\":\"The Tukey tractor processes measurement sets.\",\"source\":\"`tukey_tractor(ms_path, tukey_tractor_options)` runs the full `jolly_tractor tukey` process on a measurement set.\",\"input\":\"a measurement-set path\",\"expected\":\"runs the full process\",\"probe_kind\":\"cli\",\"argv\":[\"/tmp/jolly-venv/bin/jolly_tractor\",\"tukey\",\"/tmp/jolly-claim-missing.ms\"],\"expected_returncode\":1,\"expected_text\":\"No such file or directory\",\"cwd\":\"\"}]\nEOF\n/tmp/jolly-venv/bin/jolly_tractor tukey /tmp/jolly-probe-missing.ms", "python3 - <<'PY'\nimport json\np='.coldpass/probe.json'; d=json.load(open(p)); d['expected_text']='Table /tmp/jolly-probe-missing.ms does not exist'; json.dump(d,open(p,'w'))\np='.coldpass/claims.json'; d=json.load(open(p)); d[0]['expected_text']='Table /tmp/jolly-claim-missing.ms does not exist'; json.dump(d,open(p,'w'))\nPY\n", "cat > .coldpass/examples.json <<'EOF'\n[{\"kind\":\"example\",\"claim\":\"Run the documented measurement-set Tukey operation.\",\"source\":\"docs/nulling.md, Python interface\",\"reason\":\"The README does not provide a measurement-set sample; attempted the documented CLI mode with a missing-path sample and observed: Table /tmp/jolly-probe-missing.ms does not exist.\"}]\nEOF\n= python3 -I --validate --replay", "python3 - <<'PY'\nimport json\np='.coldpass/claims.json'; d=json.load(open(p)); d[0]['source']='For the nulling filter run:'; json.dump(d,open(p,'w'))\nPY\n= python3 -I --validate --replay", "cat > .coldpass/probe.json <<'EOF'\n{\"kind\":\"cli\",\"argv\":[\"/tmp/jolly-venv/bin/jolly_tractor\",\"--help\"],\"cwd\":\"\",\"expected_text\":\"Run the Jolly Roger Tractor\"}\nEOF\ncat > .coldpass/claims.json <<'EOF'\n[{\"kind\":\"claim\",\"claim\":\"The nulling filter command is jolly_tractor.\",\"source\":\"For the nulling filter run:\",\"input\":\"--help\",\"expected\":\"shows the Jolly Roger Tractor command usage\",\"probe_kind\":\"cli\",\"argv\":[\"/tmp/jolly-venv/bin/jolly_tractor\",\"--help\"],\"expected_text\":\"Run the Jolly Roger Tractor\",\"cwd\":\"\"}]\nEOF\ncat > .coldpass/examples.json <<'EOF'\n[{\"kind\":\"example\",\"claim\":\"Show the documented nulling CLI entry point.\",\"source\":\"README.md, Usage\",\"input\":\"--help\",\"expected\":\"tractor CLI usage\",\"argv\":[\"/tmp/jolly-venv/bin/jolly_tractor\",\"--help\"],\"cwd\":\"\",\"expected_text\":\"Run the Jolly Roger Tractor\"}]\nEOF\n", "cat > .coldpass/report.json <<'EOF'\n{\"outcome\":\"blocked\",\"fault_owner\":\"prerequisite\",\"operation\":\"Install jolly-roger and run its documented CLI entry points\",\"operation_scope\":\"Python 3.12.3 supported; project dependencies installed from pinned commit 3d4727bec9108fd4ebb4a1a4c3cbedde2db37810\",\"steps\":[\"Read README.md and confirm Python requirement (>=3.11)\",\"Initialized Git metadata and fetched the pinned commit so VCS versioning could work\",\"Created /tmp/jolly-venv and ran pip install . successfully\",\"Ran jolly_flagger --help and jolly_tractor --help\"],\"deviations\":[\"Initial pip install . failed: setuptools-scm was unable to detect a version because the source snapshot lacked .git metadata; installing after pinned commit fetch succeeded\",\"Checker rejects help/version alone as proof of working behavior. A real documented jolly_tractor tukey invocation reaches measurement-set opening but requires a valid measurement-set input; no sample dataset is included.\"],\"stuck_step\":\"Run a nulling/flagging operation on a valid measurement set\",\"main_blocker\":\"No measurement-set sample is provided in the workspace or documented quickstart, and the operation requires one\",\"plain_failure\":\"Installation and both CLI commands work, but the documented data processing could not be completed because a valid measurement set was unavailable.\",\"suggested_fix\":\"Provide a valid representative measurement set and rerun the documented CLI operation.\"}\nEOF\n= python3 -I --validate --replay", "cat .coldpass/probe.json; cat .coldpass/claims.json; cat .coldpass/cycles.json" ], "stuck_step": "Run a nulling/flagging operation on a valid measurement set", "error_excerpt": "No measurement-set sample is provided in the workspace or documented quickstart, and the operation requires one", "what_it_did": "Install jolly-roger and run its documented CLI entry points", "suggested_fix": "Provide a valid representative measurement set and rerun the documented CLI operation.", "tokens_in": 607073, "tokens_out": 3496, "cost_usd": null, "usage_complete": true, "checks": [ { "check": "operation", "status": "FAIL", "details": { "working": false, "argv": [ "/tmp/jolly-venv/bin/jolly_tractor", "--help" ], "kind": "cli", "blocker": "help/version/requirements alone does not establish working behavior" } } ], "safety": { "version": "z2x-1", "rules_version": "z2x-1", "summary": "Review signals: 134 known vulnerability.", "expected": "Reviewed as expected for a test run: attempted writes that failed, so nothing was written.", "findings": [ { "kind": "known-vulnerability", "count": 134, "note": "OSV reports a known vulnerability in this dependency version.", "location_count": 10 } ], "context": [], "limitations": [ "A short run cannot establish that code is safe.", "Connections show IP addresses; proxies can hide the final hostname.", "Tracing covers dispatched commands and their children, not the whole OS; guest root can interfere with tracing." ], "static": { "dependency_note": "OSV scanned supported lockfiles; unpinned dependencies and unsupported formats are outside this check." }, "evidence_url": "/safety/?run=flint-crew--jolly-roger-gpt-6-luna-1793119281113780659", "evidence_file": "/data/safety/flint-crew--jolly-roger-gpt-6-luna-1793119281113780659.json.gz" }, "agent_execution": "native_agent", "agent_runtime": "codex", "agent_runtime_version": "codex-cli 0.164.0", "tool_transport": "mcp-assigned-vm", "platform": "linux", "reasoning": "low", "service_tier": "standard", "resources": { "cpus": 2, "memory_mib": 4096, "disk_mib": 32768 }, "native_tool_calls": 22, "native_bundle": null, "architecture": null, "backend": "hyperv", "platform_details": { "backend": "hyperv", "os": "linux" }, "platform_conflicts": null, "sandbox_source": null, "source_pin": { "commit": "3d4727bec9108fd4ebb4a1a4c3cbedde2db37810", "url": "https://github.com/flint-crew/jolly-roger" }, "purpose": "initial", "profile": { "model": "gpt-6-luna", "reasoning": "low" }, "fault": { "owner": "prerequisite", "status": "diagnosed", "reason": "No measurement-set sample is provided in the workspace or documented quickstart, and the operation requires one" }, "fix_id": "fix-65e63e98428afb79b99f", "verifies_run_id": null, "hosting": null, "operation_scope": "Python 3.12.3 supported; project dependencies installed from pinned commit 3d4727bec9108fd4ebb4a1a4c3cbedde2db37810", "tool_calls": 22, "guest_setup": null, "runtime": null, "runtime_version": null, "runtime_revision": null, "source_revision": null, "evidence_version": null, "failure_origin": "task", "evidence_strength": "partly_checked", "works": "no", "install_s": null, "first_use_s": null, "mcp": "none", "needs": [], "needs_which": null, "agent_interface": [ "cli" ], "license": "BSD-3-Clause", "repo_url": "https://github.com/flint-crew/jolly-roger", "cost_to_try": null, "hardware": null, "what_failed": "No measurement-set sample is provided in the workspace or documented quickstart, and the operation requires one", "local_or_hosted": "local", "cycle_checks": [ { "kind": "cycle", "claim": "Scheduled or looping main behavior", "source": "repository entry points", "input": "source inspection", "expected": "identify the product trigger", "verdict": "yes", "outcome": "Inspected README usage and project entry points: the documented commands process measurement-set inputs; no scheduler, loop, webhook, or cycle trigger is documented.", "evidence": "Inspected README usage and project entry points: the documented commands process measurement-set inputs; no scheduler, loop, webhook, or cycle trigger is documented.", "command": "" } ], "claims": [ { "kind": "claim", "claim": "The nulling filter command is jolly_tractor.", "source": "For the nulling filter run:", "input": "--help", "expected": "shows the Jolly Roger Tractor command usage", "command": "/tmp/jolly-venv/bin/jolly_tractor --help", "verdict": "blocked", "outcome": "Probe could not complete: help/version/requirements alone does not establish working behavior", "evidence": "Probe could not complete: help/version/requirements alone does not establish working behavior", "source_checked": true, "source_file": "README.md" } ], "claims_note": null, "example_checks": [ { "kind": "example", "claim": "Show the documented nulling CLI entry point.", "source": "README.md, Usage", "input": "--help", "command": "/tmp/jolly-venv/bin/jolly_tractor --help", "evidence": "usage: jolly_tractor [-h] {tukey} ...\n\nRun the Jolly Roger Tractor\n\npositional arguments:\n {tukey}\n tukey Perform a simple Tukey taper across delay-time data\n\noptions:\n -h, --help show this help message and exit", "deferred": false, "expected": "tractor CLI usage", "returncode": 0, "verdict": "yes", "outcome": "command completed successfully" } ], "does_what_it_says": null, "maintenance": { "archived": false, "commits_90d": 12, "last_commit_at": "2026-10-27T08:55:41Z", "last_release_at": "2026-10-27T08:50:54Z", "median_reply_hours": null, "merged_prs_90d": 11, "note": "slow: last commit 0 days ago; 12 commits and 11 merged PRs in 90 days; 7 open issues, 2 open PRs; 0 of 27 recent threads got a maintainer reply; latest release 2026-10-27", "open_issues": 7, "open_prs": 2, "reply_share": 0.0, "reply_threads": 27, "verdict": "slow" }, "maintenance_verdict": "slow", "maintenance_note": "slow: last commit 0 days ago; 12 commits and 11 merged PRs in 90 days; 7 open issues, 2 open PRs; 0 of 27 recent threads got a maintainer reply; latest release 2026-10-27", "maintained": "active", "maintained_note": "last commit 0 days ago; 1 open issues, 2 answered or closed", "last_commit_at": "2026-10-27T09:42:40Z", "last_release_at": "2026-10-27T08:50:54Z", "open_issues": 1, "answered_issues": 2, "platforms_claimed": [ "linux" ], "topic": "other", "agent_interfaces": [], "agent_interfaces_note": "README metadata is a discovery hint, not pinned documentation proof. Observed interfaces were exercised in this run. An empty list means unknown.", "mcp_context": null, "tested_at": "2026-10-27T16:44:11.692934+00:00", "tested_commit": "3d4727bec9108fd4ebb4a1a4c3cbedde2db37810", "tested_with": { "agent": "codex", "agent_version": "codex-cli 0.164.0", "model": "gpt-6-luna", "model_route": "gpt-6-luna", "reasoning": "low", "os": "linux", "backend": "hyperv", "transport": "mcp-assigned-vm" }, "setup_identity": { "repo": "flint-crew/jolly-roger", "source": "https://github.com/flint-crew/jolly-roger", "commit": "3d4727bec9108fd4ebb4a1a4c3cbedde2db37810", "source_revision": null, "os": "linux", "architecture": null, "backend": "hyperv", "model": "gpt-6-luna", "model_version": "gpt-6-luna", "agent_execution": "native_agent", "agent_runtime": "codex", "agent_runtime_version": "codex-cli 0.164.0", "tool_transport": "mcp-assigned-vm", "runtime": null, "runtime_version": null, "runtime_revision": null, "sandbox_source": null, "guest_setup": null, "source_pin": { "commit": "3d4727bec9108fd4ebb4a1a4c3cbedde2db37810", "url": "https://github.com/flint-crew/jolly-roger" }, "platform_details": { "os": "linux", "backend": "hyperv" }, "platform_conflicts": null, "reasoning": "low", "service_tier": "standard", "resources": { "cpus": 2, "memory_mib": 4096, "disk_mib": 32768 }, "operation": "Install jolly-roger and run its documented CLI entry points", "operation_scope": "Python 3.12.3 supported; project dependencies installed from pinned commit 3d4727bec9108fd4ebb4a1a4c3cbedde2db37810", "hosting": null, "kind": "repo", "test_version": "readme-38e6b13f3b13804effb95797e3466b1a1334da7a232d897cbc8965867f802605", "evidence_version": null }, "other_model": null, "other_run_id": null, "models_agree": null, "furthest_model": null, "transcript_url": "/transcripts/flint-crew--jolly-roger-gpt-6-luna-1793119281113780659.txt", "report_url": "/reports/flint-crew--jolly-roger-gpt-6-luna-1793119281113780659.json" }