{ "run_id": "forest-modeling--PyFVS-claude-haiku-5-5-1793168314650388601", "date": "2026-10-28T06:30:48.917186+00:00", "repo": "forest-modeling/PyFVS", "kind": "repo", "source": "https://github.com/forest-modeling/PyFVS", "commit": "e95172baec0143bd8ccf2c0d21f9f5ffc62da601", "model": "claude-haiku-5-5", "model_version": "claude-haiku-5-5", "test_version": "readme-a0d0e27a4d0fd4c50903587087c25799260ee2578ee1953a6356df3e4fd02c35", "pass": true, "outcome": "pass", "time_to_working_s": 690.0336371159938, "total_s": 734.2667074203491, "steps": [ "cd && ls -la && cat README.md | head -c 6000 && python3 --version", "cd && tail -c 900 README.md; echo ---; cat .gitmodules; echo ---; ls .coldpass; cat build.sh; echo ---; cat pyproject.toml | head -80; python3 --version; ls /inputs 2>/dev/null", "cd && ls -la fvs build_fvs | head -30; ls src src/*; ls tests; cat requirements.txt; cat pixi.toml | head -60; which gfortran gcc g++ meson ninja pixi uv 2>&1; sudo -n true && echo SUDO_OK", "cd && git init -q && git remote add origin https://github.com/forest-modeling/PyFVS && timeout 300 git fetch --depth 1 origin e95172baec0143bd8ccf2c0d21f9f5ffc62da601; echo rc=$?; git reset --mixed FETCH_HEAD; echo rc=$?; git log --oneline -1; git status --short | head", "cd && git submodule status 2>&1 | head; timeout 200 git submodule update --init --depth 1 fvs 2>&1 | tail -5; echo rc=$?; ls fvs | head; ls -la src/pyfvs | head -3", "cd /tmp && curl -fsSL https://pixi.sh/install.sh | sh 2>&1 | tail -5; ls -la ~/.pixi/bin 2>/dev/null; ~/.pixi/bin/pixi --version 2>&1", "cd && export PIXI_NO_TELEMETRY=1 DO_NOT_TRACK=1 PATH= && nohup pixi run dev \"pn,wc\" debug > 2>&1 &\nsleep 240; tail -5 ", "grep -v \"^\\s*$\" | grep -iE \"error|fail|not found|require|fortran|meson\" | head -40", "cd && sed -n 605,625p meson.build; ls fvs/volume 2>&1 | head; find fvs -iname \"*bia_behres*\" 2>/dev/null; find fvs -iname \"*behres*\" | head; git -C fvs log --oneline -1; git -C fvs status --short | head -3; cat build_notes.md | head -60", "cd && ls fvs/volume/NVEL | head -50; grep -rn \"bia_behres\" meson.build fvs/bin 2>/dev/null | head; grep -n \"NVEL\" meson.build | head", "cd && cat .gitmodules 2>/dev/null; git ls-tree HEAD volume/NVEL; git submodule status 2>&1 | head", "cd && timeout 300 git submodule update --init --recursive volume/NVEL 2>&1 | tail -4; echo rc=$?; ls volume/NVEL | head -5; ls volume/NVEL/bia_behres.f 2>&1", "cd && export PIXI_NO_TELEMETRY=1 DO_NOT_TRACK=1 PATH= && rm -rf build && nohup pixi run dev \"pn,wc\" debug > 2>&1 &\nsleep 280; tail -c 1500 ", "cd && P=; $P --help; echo rc=$?; $P list-variants; echo rc=$?; $P run --help 2>&1 | head -30", "cd && cat bg_test.key; echo ---; cat nc_carbon.key | head -30; ls reg_test | head; cat conftest.py | head -40", "mkdir -p && cp && cd && timeout 600 run PN -k bg_test.key > run.out 2>&1; echo rc=$?; tail -c 2500 run.out; ls -la", "cd && head -c 1200 run.out; echo; echo ---; head -c 900 bg_test.sum; echo; grep -c \"\" run.out", "cd && mkdir -p .coldpass && cat > .coldpass/probe.json <<'EOF'\n{\"kind\":\"cli\",\"argv\":[\"\",\"run\",\"PN\",\"-k\",\"bg_test.key\"],\"cwd\":\"\",\"expected_text\":\"rem_mbdft\"}\nEOF\ncat .coldpass/probe.json; ls 2>&1; ls /inputs 2>&1", "cd && cat > .coldpass/claims.json <<'EOF'\n[{\"kind\":\"claim\",\"claim\":\"pyfvs list-variants lists the supported FVS variants\",\"source\":\">pyfvs list-variants\",\"input\":\"list-variants\",\"expected\":\"prints the installed variant table including PN\",\"probe_kind\":\"cli\",\"argv\":[\"\",\"list-variants\"],\"stdin\":\"\",\"expected_text\":\"PN - (pyfvs.fvspn) - OK\",\"cwd\":\"\"},\n{\"kind\":\"claim\",\"claim\":\"pyfvs run PN -k runs a simulation from a keyword file\",\"source\":\">pyfvs run PN -k path/to/keywords.key\",\"input\":\"bg_test.key\",\"expected\":\"prints the yearly summary table with the rem_mbdft column\",\"probe_kind\":\"cli\",\"argv\":[\"\",\"run\",\"PN\",\"-k\",\"bg_test.key\"],\"expected_text\":\"rem_mbdft\",\"cwd\":\"\"}]\nEOF\npython3 -m json.tool .coldpass/claims.json >/dev/null && echo OK; python3 -m json.tool .coldpass/probe.json >/dev/null && echo OK2", "cd && = python3 -I --validate --replay 2>&1 | tail -c 4000", "cd && = python3 -I --validate --replay > 2>; echo rc=$?; python3 -I -c \"\nimport json,sys\nd=json.load(open(''))\nprint({k:(v if not isinstance(v,(dict,list)) else type(v).__name__) for k,v in d.items()})\n\" ; head -c 600 ", "cd && export PIXI_NO_TELEMETRY=1 DO_NOT_TRACK=1 && timeout 1500 run test > 2>&1; echo rc=$?; tail -c 1200 ", "grep -E \"passed|failed|error\" | tail -5; grep -c \"\" ", "cd && cat > .coldpass/examples.json <<'EOF'\n[{\"kind\":\"example\",\"claim\":\"The README Run Tests section runs the repository test suite (pixi run test)\",\"source\":\"README.md Run Tests\",\"input\":\"pixi run test\",\"expected\":\"pytest reports all tests passing\",\"argv\":[\"\",\"run\",\"test\"],\"cwd\":\"\",\"env\":{\"PIXI_NO_TELEMETRY\":\"1\",\"DO_NOT_TRACK\":\"1\"},\"expected_text\":\"14 passed\"}]\nEOF\ncat > .coldpass/cycles.json <<'EOF'\n{\"detected\":false,\"checks\":[],\"reason\":\"Inspected README.md (Command Line, Usage, Development and Build sections), pyproject.toml [project.scripts] (only pyfvs=pyfvs.__main__:cli), src/pyfvs/__main__.py and pixi.toml tasks (dev, build, test). No cron, scheduler, loop, webhook, --once or --now trigger exists; the only loop is the user-written 'for cycle in f:' simulation iteration in the Python API example, which is not a product schedule.\"}\nEOF\npython3 -m json.tool .coldpass/examples.json >/dev/null && python3 -m json.tool .coldpass/cycles.json >/dev/null && echo OK; = python3 -I --validate --replay > 2>; echo rc=$?; python3 -I -c \"\nimport json\nd=json.load(open(''))\nprint('valid',d.get('valid')); print('problems',json.dumps(d.get('problems'))[:1500])\"", "cd && python3 -I -c \"\nimport json\nd=json.load(open(''))\nr=d.get('replay',{})\nprint(list(r.keys()) if isinstance(r,dict) else type(r))\nprint({k:(len(v) if isinstance(v,list) else v) for k,v in r.items() if not isinstance(v,dict)})\n\"; cat > .coldpass/report.json <<'EOF'\n{\"outcome\":\"working\",\"fault_owner\":null,\"operation\":\"Build PyFVS from the pinned source with the README Local Development Build (pixi run dev), then run the README CLI: pyfvs list-variants and pyfvs run PN -k , plus the README Run Tests task (pixi run test).\",\"operation_scope\":\"Linux x86_64 guest, Python 3.14 from the Pixi environment (pixi.toml pins >=3.14.7,<3.15), FVS variants PN and WC, commit e95172baec0143bd8ccf2c0d21f9f5ffc62da601. Command-line interface and offline pytest suite only. Browser, credentials and the Python API quickstart were not exercised.\",\"steps\":[\"git init; git remote add origin https://github.com/forest-modeling/PyFVS; git fetch --depth 1 origin e95172baec0143bd8ccf2c0d21f9f5ffc62da601; git reset --mixed FETCH_HEAD\",\"git submodule update --init --depth 1 fvs (ForestVegetationSimulator at ef5fa84)\",\"git submodule update --init --recursive volume/NVEL inside fvs (VolumeLibrary at 97d2070)\",\"curl -fsSL https://pixi.sh/install.sh | sh (pixi 0.83.0)\",\"pixi run dev \\\"pn,wc\\\" debug (README Local Development Build)\",\"pyfvs list-variants (README Command Line)\",\"pyfvs run PN -k bg_test.key (README Command Line; bg_test.key copied from tests/ to )\",\"pixi run test (README Run Tests): 14 passed\"],\"deviations\":[\"The fvs submodule and its nested volume/NVEL submodule were not initialized by the README steps; the first pixi run dev failed with 'File fvs/volume/NVEL/bia_behres.f does not exist'. Initializing the nested submodule at its pinned commit fixed it; no product source was edited.\",\"The README Command Line examples use the PyPI install (python -m pip install pyfvs); I used the README's local development build from this checkout instead so the tested code is the pinned source.\",\"pixi.toml pins Python >=3.14.7,<3.15 while the README heading says 'Python 3.12.3'. I followed pixi.toml, which the dev task uses; the Python 3.12.3 note was not exercised.\",\"The Pixi installer printed an anonymous telemetry ping before I set PIXI_NO_TELEMETRY=1 and DO_NOT_TRACK=1 for later commands.\",\"/inputs/coldpass-preflight.py does not exist in this guest; I ran the validation with as instructed by the checker path available here.\",\"No cycle/scheduler exists in the product, so no cycle check was run.\",\"The README Python API quickstarts (fvs.FVS('PN'), init_projection, end_projection) were not run as examples; they are not replayable as shown because the keyword path is a placeholder.\"],\"stuck_step\":null,\"main_blocker\":null,\"plain_failure\":null,\"suggested_fix\":\"None required for the verified CLI and test path. Consider documenting the submodule init (git submodule update --init --recursive, including fvs/volume/NVEL) in the README development section, and reconciling the 'Python 3.12.3' note with pixi.toml's Python 3.14 pin.\"}\nEOF\npython3 -m json.tool .coldpass/report.json >/dev/null && echo REPORT_OK" ], "stuck_step": null, "error_excerpt": null, "what_it_did": "Build PyFVS from the pinned source with the README Local Development Build (pixi run dev), then run the README CLI: pyfvs list-variants and pyfvs run PN -k , plus the README Run Tests task (pixi run test).", "suggested_fix": null, "tokens_in": 653818, "tokens_out": 13679, "cost_usd": 0.02073441, "usage_complete": true, "checks": [ { "check": "operation", "status": "PASS", "details": { "working": true, "argv": [ "", "run", "PN", "-k", "bg_test.key" ], "kind": "cli", "returncode": 0, "stdout": " year age tpa baa qmd top_ht tcuft mcuft mbdft rem_mbdft mort\n0 2010 0 0 0 NaN 0 0 0 0 0 0\n1 2020 10 427 3 1.1 10 0 0 0 0 0\n2 2030 20 399 41 4.3 30 493 0 0 0 1\n3 2040 30 391 170 8.9 47 3436 2816 14783 0 6\n4 2050 40 383 308 12.1 61 7154 6578 31552 0 21\n5 2060 50 370 419 14.4 73 10951 10215 50072 0 54\n6 2070 60 347 500 16.3 83 14243 13627 69946 0 204\n7 2080 70 280 511 18.3 91 15545 15157 80991 0 98\n8 2090 80 256 548 19.8 97 17414 16982 93184 0 250\n9 2100 90 204 524 21.7 103 17513 17132 98295 0 91\n10 2110 100 189 548 23.1 108 18931 18637 109352 0 207\n[excerpt truncated]", "stderr": "", "needs_credentials": false, "needs_browser": false, "scope": "product operation" } } ], "safety": { "version": "z2x-1", "rules_version": "z2x-1", "summary": "Review signals: 1 connection review, 1 sensitive read.", "expected": "Reviewed as expected for a test run: attempted writes that failed, so nothing was written.", "findings": [ { "kind": "connection-review", "count": 1, "note": "Repository processes attempted these non-loopback connections; proxies can hide the final hostname.", "location_count": 8, "process_count": 1, "processes": [ { "address": "2a04:4e42::223:443", "executable": "", "owner": "repo", "pid": "2397", "source": "" } ] }, { "kind": "sensitive-read", "count": 1, "note": "A repository process attempted to read this sensitive path.", "location_count": 1, "file_kind": "saved web login", "process_count": 2 } ], "context": [], "limitations": [ "A short run cannot establish that code is safe.", "Connections show IP addresses; proxies can hide the final hostname.", "Tracing covers dispatched commands and their children, not the whole OS; guest root can interfere with tracing." ], "static": { "dependency_note": "OSV scanned supported lockfiles; unpinned dependencies and unsupported formats are outside this check." }, "evidence_url": "/safety/?run=forest-modeling--PyFVS-claude-haiku-5-5-1793168314650388601", "evidence_file": "/data/safety/forest-modeling--PyFVS-claude-haiku-5-5-1793168314650388601.json.gz" }, "agent_execution": "native_agent", "agent_runtime": "claude-code", "agent_runtime_version": "2.1.310 (Claude Code)", "tool_transport": "mcp-assigned-vm", "platform": "linux", "reasoning": "low", "service_tier": null, "resources": { "cpus": 2, "memory_mib": 4096, "disk_mib": 32768 }, "native_tool_calls": 25, "native_bundle": null, "architecture": null, "backend": "hyperv", "platform_details": { "backend": "hyperv", "os": "linux" }, "platform_conflicts": null, "sandbox_source": null, "source_pin": { "commit": "e95172baec0143bd8ccf2c0d21f9f5ffc62da601", "url": "https://github.com/forest-modeling/PyFVS" }, "purpose": "initial", "profile": { "model": "claude-haiku-5-5", "reasoning": "low" }, "fault": { "owner": null, "status": "resolved", "reason": null }, "fix_id": null, "verifies_run_id": null, "hosting": null, "operation_scope": "product operation", "tool_calls": 25, "guest_setup": null, "runtime": null, "runtime_version": null, "runtime_revision": null, "source_revision": null, "evidence_version": null, "failure_origin": null, "evidence_strength": "readme_checked", "works": "yes", "install_s": null, "first_use_s": null, "mcp": "none", "needs": [], "needs_which": null, "agent_interface": [ "cli" ], "license": "MIT", "repo_url": "https://github.com/forest-modeling/PyFVS", "cost_to_try": "free", "hardware": null, "what_failed": null, "local_or_hosted": "local", "cycle_checks": [ { "kind": "cycle", "claim": "Scheduled or looping main behavior", "source": "repository entry points", "input": "source inspection", "expected": "identify the product trigger", "verdict": "yes", "outcome": "Inspected README.md (Command Line, Usage, Development and Build sections), pyproject.toml [project.scripts] (only pyfvs=pyfvs.__main__:cli), src/pyfvs/__main__.py and pixi.toml tasks (dev, build, test). No cron, scheduler, loop, webhook, --once or --now trigger exists; the only loop is the user-written 'for cycle in f:' simulation iteration in the Python API example, which is not a product schedule.", "evidence": "Inspected README.md (Command Line, Usage, Development and Build sections), pyproject.toml [project.scripts] (only pyfvs=pyfvs.__main__:cli), src/pyfvs/__main__.py and pixi.toml tasks (dev, build, test). No cron, scheduler, loop, webhook, --once or --now trigger exists; the only loop is the user-written 'for cycle in f:' simulation iteration in the Python API example, which is not a product schedule.", "command": "" } ], "claims": [ { "kind": "claim", "claim": "pyfvs list-variants lists the supported FVS variants", "source": ">pyfvs list-variants", "input": "list-variants", "expected": "prints the installed variant table including PN", "command": " list-variants", "verdict": "yes", "outcome": "Real input produced the expected result: PN - (pyfvs.fvspn) - OK", "evidence": "\u2026PN - (pyfvs.fvspn) - OK - \u0000\u0000\u0000\u0000\u0000\u0000\u0000\u0000\u0000\u0000 (unknown)\n WC - (pyfvs.fvswc) - OK - \u0000\u0000\u0000\u0000\u0000\u0000\u0000\u0000\u0000\u0000 (unknown)\n\n", "returncode": 0, "source_checked": true, "source_file": "README.md" }, { "kind": "claim", "claim": "pyfvs run PN -k runs a simulation from a keyword file", "source": ">pyfvs run PN -k path/to/keywords.key", "input": "bg_test.key", "expected": "prints the yearly summary table with the rem_mbdft column", "command": " run PN -k bg_test.key", "verdict": "yes", "outcome": "Real input produced the expected result: rem_mbdft", "evidence": "\u2026rem_mbdft mort\n0 2010 0 0 0 NaN 0 0 0 0 0 0\n1 2020 10 427 3 1.1 10 0 0 0 0 0\n2 2030 20 399 41 4.3 30 493 0 0 0 1\n3 2040 30 391 170 8.9 47 3436 2816 14783 0 6\n4 2050 40 383 308 12.1 61 7154 6578 31552 0 21\n5 2060 50 370 419 14.4 73 10951 10215 50072 0 54\n6 2070 60 347 500 16.3 83 14243 13627 69946 0 204\n7 2080 70 280 511 18.3 91 15545 ", "returncode": 0, "source_checked": true, "source_file": "README.md" } ], "claims_note": null, "example_checks": [ { "kind": "example", "claim": "The README Run Tests section runs the repository test suite (pixi run test)", "source": "README.md Run Tests", "input": "pixi run test", "command": " run test", "evidence": " 0 239 421 70 11.0 652 67\n 40 316 343 550 95 14.1 12004 231 7919 36629 120 182 95 16.1 296 10\n 50 83 165 234 118 19.1 6943 0 0 0 165 234 118 19.1 298 17\n 60 81 203 275 138 21.4 9759 0 0 0 203 275 138 21.4 300 24\n 70 79 239 312 156 23.6 12518 0 0 0 239 312 156 23.6 272 32\n 80 77 267 339 172 25.3 14920 0 0 0 267 339 172 25.3 276 39\n 90 74 294 365 185 27.0 17293 0 0 0 294 365 185 27.0 276 48\n 100 72 318 386 195 28.6 19577 0 0 0 318 386 195 28.6 0 0\n\u2728 Pixi task (test): pytest tests", "deferred": false, "expected": "pytest reports all tests passing", "returncode": 0, "verdict": "yes", "outcome": "command completed successfully" } ], "does_what_it_says": "yes", "maintenance": { "last_commit_at": "2026-10-07T23:10:41Z", "commits_90d": 23, "merged_prs_90d": 2, "open_issues": 3, "open_prs": 0, "reply_share": 0.0, "reply_threads": 13, "median_reply_hours": null, "last_release_at": "2026-10-04T06:34:16Z", "archived": false, "verdict": "slow", "note": "slow: last commit 20 days ago; 23 commits and 2 merged PRs in 90 days; 3 open issues, 0 open PRs; 0 of 13 recent threads got a maintainer reply; latest release 2026-10-04" }, "maintenance_verdict": "slow", "maintenance_note": "slow: last commit 20 days ago; 23 commits and 2 merged PRs in 90 days; 3 open issues, 0 open PRs; 0 of 13 recent threads got a maintainer reply; latest release 2026-10-04", "maintained": "active", "maintained_note": "last commit 5 days ago; 3 open issues, 5 answered or closed", "last_commit_at": "2026-10-22T07:44:58Z", "last_release_at": "2026-10-04T06:34:16Z", "open_issues": 3, "answered_issues": 5, "platforms_claimed": [ "linux", "mac", "windows" ], "topic": "other", "agent_interfaces": [ { "interface": "cli", "evidence": "independent checker", "observed": true, "operation_checked": true } ], "agent_interfaces_note": "README metadata is a discovery hint, not pinned documentation proof. Observed interfaces were exercised in this run. An empty list means unknown.", "mcp_context": null, "tested_at": "2026-10-28T06:30:48.917186+00:00", "tested_commit": "e95172baec0143bd8ccf2c0d21f9f5ffc62da601", "tested_with": { "agent": "claude-code", "agent_version": "2.1.310 (Claude Code)", "model": "claude-haiku-5-5", "model_route": "claude-haiku-5-5", "reasoning": "low", "os": "linux", "backend": "hyperv", "transport": "mcp-assigned-vm" }, "setup_identity": { "repo": "forest-modeling/PyFVS", "source": "https://github.com/forest-modeling/PyFVS", "commit": "e95172baec0143bd8ccf2c0d21f9f5ffc62da601", "source_revision": null, "os": "linux", "architecture": null, "backend": "hyperv", "model": "claude-haiku-5-5", "model_version": "claude-haiku-5-5", "agent_execution": "native_agent", "agent_runtime": "claude-code", "agent_runtime_version": "2.1.310 (Claude Code)", "tool_transport": "mcp-assigned-vm", "runtime": null, "runtime_version": null, "runtime_revision": null, "sandbox_source": null, "guest_setup": null, "source_pin": { "commit": "e95172baec0143bd8ccf2c0d21f9f5ffc62da601", "url": "https://github.com/forest-modeling/PyFVS" }, "platform_details": { "os": "linux", "backend": "hyperv" }, "platform_conflicts": null, "reasoning": "low", "service_tier": null, "resources": { "cpus": 2, "memory_mib": 4096, "disk_mib": 32768 }, "operation": "Build PyFVS from the pinned source with the README Local Development Build (pixi run dev), then run the README CLI: pyfvs list-variants and pyfvs run PN -k , plus the README Run Tests task (pixi run test).", "operation_scope": "product operation", "hosting": null, "kind": "repo", "test_version": "readme-a0d0e27a4d0fd4c50903587087c25799260ee2578ee1953a6356df3e4fd02c35", "evidence_version": null }, "other_model": null, "other_run_id": null, "models_agree": null, "furthest_model": null, "transcript_url": "/transcripts/forest-modeling--PyFVS-claude-haiku-5-5-1793168314650388601.txt", "report_url": "/reports/forest-modeling--PyFVS-claude-haiku-5-5-1793168314650388601.json" }